Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789259.1d.7c with 23 members (segment polarity protein)

Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata /

... /

Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria /

Laurasiatheria /

Completeness score: 0.85

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

93.1%

This HOG has 6225 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0537648	Lophotrochozoa	21		81.0%	3
HOG:E0564670	Chromadorea	17		100.0%	3
HOG:E0551157	Caenorhabditis	6		83.3%	3
HOG:E0738761	Sarcopterygii	5		80.0%	3
HOG:E0505814	Platyhelminthes	4		100.0%	3
HOG:E0550139	Tylenchina	3		66.7%	3
HOG:E0577101	Astigmata	3		100.0%	3
HOG:E0781292	Eumetazoa	331		87.9%	2
HOG:E0789433	Metazoa	284		90.1%	2
HOG:E0692147	Percomorphaceae	20		70.0%	2
HOG:E0747847	Gnathostomata	6		66.7%	2
HOG:E0777220	Bilateria	3		100.0%	2
HOG:E0555616	Caenorhabditis	3		66.7%	2
HOG:E1014440	Bacteria	3		100.0%	2
HOG:E0988161	p__Proteobacteria	10688		61.5%	1
HOG:E0993046	Bacteria	9235		55.9%	1
HOG:E0990729	Bacteria	6256		20.6%	1
HOG:E0992146	Bacteria	5414		51.7%	1
HOG:E0991967	Bacteria	5012		93.6%	1
HOG:E0990662	Bacteria	4204		92.8%	1
HOG:E1029445	LUCA	4049		54.3%	1
HOG:E0990940	Bacteria	3911		100.0%	1
HOG:E0990891	Bacteria	3899		88.0%	1
HOG:E0967506	f__Burkholderiaceae	3646		59.1%	1
HOG:E0990706	Bacteria	3503		56.8%	1

Showing 1 to 25 of 6224 rows rows per page